Function reference • PhaseTypeGenetics

PhaseTypeGenetics The package documentation
`PhaseTypeGenetics`	PhaseTypeGenetics: A package providing several properties of the phase-type distribution with applications in population genetics
Phase-type distributions Analysing phase-type distributions
`discphasetype()` `contphasetype()`	Phase-type distributed objects
`dphasetype()` `pphasetype()` `qphasetype()` `rphasetype()`	The phase-type distribution
`minima()` `maxima()`	Minima and maxima of phase-type distributions
`phmean()` `phvar()`	Mean and variance of phase-type distributions
`moments()`	Statistical moments of phase-type distributions
`phsum()`	Sum of phase-type distributions
`summary(<discphasetype>)` `summary(<contphasetype>)`	Summaries of phase-type distributed objects
Applications in population genetics The package includes some functions that are useful in connection to population genetics
`BlockCountProcess()`	Block counting process
`discretization()`	Discretizing a continuous phase-type distribution
`dSegregatingSites()`	The number of segregating sites
`RewTransDistribution()`	Reward transformation
`SiteFrequencies()`	Site frequency spectrum
Data
`T_MRCA`	The time to the most recent common ancestor (MRCA) for a sample size of n = 5,10,20,50 and 100.
`T_Total`	The total branch length for a sample size of n = 5,10,20,50 and 100.

Reference