Continuous phase-type distributions

cont_phase_type()

cont_phase_type class

t_mrca()

Time until the most recent common ancestor

t_total()

Total tree length

Discrete phase-type distributions

disc_phase_type()

disc_phase_type class

kingsman()

Simulate Matrices from Kingsman coalescent

segsites()

Segregating sites

itons()

I-tons (frequency counts)

tailstat()

Tail Statistic

sfs()

Site Frequency Spectrum

Distribution, quantile and probability functions

dphtype() qphtype() pphtype() rphtype()

Density, distribution function, quantile function and random generation for phase-type distributions

Helper functions

Internal helper functions.

RateMAndStateSpace()

RateMAndStateSpace

RewTransform()

Discretize MPH object with a reward vector

var()

Variance of cont_phase_type distributions